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* Represents corresponding author.
# Represents co-1st auther.
2026
1.

Farhan Ullah, Abdus Samad, Shahid Ullah* Peter Chinedu Agu, Na Yang, Ming Lei, Liang Chen & Sheng Wang.
In-silico design of peptide inhibitors targeting the SARS-CoV-2 spike protein using mutagenesis-based remodelling

Journal of Proteins and Proteomics, 2026-03-21
2.

Farhan Ullah, Wajeeha Rahman, Anees Ullah , Riffat Jehan, Ali Raza, Shamsher Khan, Zarmeena, Shahid Ullah* and Tianshun Gao.
BEDB: a comprehensive binding energy database for molecular docking and dynamics: insights into Human Metapneumovirus (HMPV) Inhibitors.

The Journal of Biological Databases and Curation, 2026-02-27
2025
3.

Farhan Ullah, Wajeeha Rahman, Anees Ullah, Shahid Ullah*, Sheng wang
In Silico Screening of Tripeptide Inhibitors Reveals Potential Lead Compounds for Targeting Zika Virus NS2B-NS3 Protease

Advances in Biomarker Sciences and Technology, 2025-11-28
5.

Yingmei Li, Shahid Ullah#, Yumei Xian, Yazhou Sun, Zilong Zheng, Xiaoyu Ma, Ming Shi, Changlin Zhang, Tian Li, Leli Zeng, Jie Chen, Yubin YB Deng, Fuxin Wei and Tianshun Gao
dbscATAC: a resource of single-cell super-enhancers/enhancers and gene markers derived from scATAC-seq data

Bioinformatics , 2025-06-23
2024
7.

Shahid Ullah*, Farhan Ullah, Wajeeha Rahman, Anees Ullah, Sultan Header, Cao Yueguang
Elucidating the Inhibitory Mechanism of Zika Virus NS2B-NS3 Protease with dipeptide Inhibitors: Insights from Molecular Docking and Molecular Dynamics Simula

PlosOne, 2024-08-08
8.

Shahid Ullah*, Farhan Ullah, Wajeeha Rahman, Anees Ullah, Bazaa Zahra, Gulzar Ahmad, Cao Yueguang
Identifying Potential Marburg Virus Inhibitors in the ZINC Database: A Bioinformatics and Molecular Dynamics Simulations Study

Journal of Biomolecular Structure and Dynamics, 2024-05-23 Accepted
9.

Shahid Ullah*, Li Yingmei , Wajeeha Rahman, Farhan Ullah, Gulzar Ahmad, Muhammad Ijaz, Anees Ullah, Hameed Ullah, Tianshun Gao.
Co-19PDB 2.0: A Comprehensive Covid-19 Database with Global AutoAlerts, Statistical Analysis, and Cancer Correlations

The Journal of Biological Databases and Curation, 2024-07-26
10.

Shahid Ullah*, Wajeeha Rahman, Farhan Ullah, Anees Ullah, Gulzar Ahmad, Muhammad Ijaz, Hameed Ullah, Din Mohammad Sharafmal
The HABD: Home of All Biological Databases Empowering Biological Research With Cutting-Edge Database Systems

Current protocol in bioinformatics, 2024-05-29
2023
11.

Gulzar Ahmad, Malik Muhammad Rizwan,Faryal Azam, Muhammad Ijaz, Ainee Urooj Khan, Shamsher Khan, Shahid Ullah,Sulaiman Faisal
Prevalence of Staphylococcus aureus and Antimicrobial Drug Residues in Chicken Liver its Antibiogram Analysis and Implications on Public Health

Indian Journal of Microbiology (Springer), 2023-07-07
12.

Shahid Ullah*, Wajeeha Rahman, Farhan Ullah, Anees Ullah, Gulzar Ahmad, Muhammad Ijaz, Tianshun Gao.
Understanding the Association between Ionizing Radiation and Breast Cancer A Comprehensive Analysis of Risk Factors and Key Findings: A Systematic Review:

Journal of Breast Cancer: Targets and Therapy, 2023-09-01 Accepted
13.

Shahid Ullah*, Wajeeha Rahman, Farhan Ullah, Anees Ullah, Riffat Jehan, Muhammad Nasir Iqbal , Iqra Ali, Tianshun Gao
Identification of lead compound screened from the natural products atlas to treat renal inflammasomes using molecular docking and dynamics simulation

Journal of Biomolecular Structure and Dynamics, 2023-09-13
14.

Shahid Ullah*, Wajeeha Rahman, Farhan Ullah, Anees Ullah, Riffat Jehan, Muhammad Nasir Iqbal, Muhammad Irfan, Tianshun Gao
A molecular dynamics simulations analysis of repurposing drugs for COVID-19 using bioinformatics methods

Journal of Biomolecular Structure and Dynamics, 2023-08-20
15.

Shahid Ullah*, Zilong Zheng, Wajeeha Rahman, Farhan Ullah, Anees Ullah, Muhammad Nasir Iqbal, Naveed Iqbal, Tianshun Gao
A computational approach to fighting type 1 diabetes by targeting 2C Coxsackie B virus protein with flavonoids

Journal: Plos one, 2023-08-30
16.

Mahmoud Elkazzaz, Shahid Ullah#, Tianshun GaoTIA, Israa M. Shamkh, Amr Ahmed, Ted X. Wu
Inhibition of colorectal cancer targets IL-6, CTLA-4, & B7-2 by Tislelizumab: molecular docking, dynamics, & STRING protein-protein network analysis,

Journal of Information in medicine unlocked, 2023-08-04
17.

Shahid Ullah*, Wajeeha Rahman, Farhan Ullah, Anees Ullah, Gulzar Ahmad, Muhammad Ijaz, Hameed Ullah, Zilong Zheng and Tianshun Gao.
AVPCD: a plant-derived medicine database of antiviral phytochemicals for cancer, Covid-19, malaria and HIV

The Journal of Biological Databases and Curation, 2023-07-24
2022
18.

Shahid Ullah*, Wajeeha Rahman, Farhan Ullah, Riffat Jehan, Anees Ullah, Hameed Ullah, Muhammad Ijaz, Gulzar Ahmad and Tianshun Gao.
FDBC: A Comprehensive Platform of the Fungi Database

Journal of Biology and Today's World, 2022-06-17
19.

Shahid Ullah*, Farhan Ullah , Wajeeha Rahman, Dimitrios A Karras, Anees Ullah, Gulzar Ahmad, Muhammad Ijaz, Tianshun Gao
The Cancer Research Database (CRDB): Integrated Platform to Gain Statistical Insight Into the Correlation Between Cancer and COVID-19

JMIR Cancer, 2022-04-10
20.

Shahid Ullah*, Tianshun Gao, Wajeeha Rahman, Farhan Ullah, Riffat Jahan, AneesUllah, Gulzar Ahmad, Muhammad Ijaz, Yihang Pan*
LDBPR: Latest Database of Protein Research

Journal Of Bioinformatics And System Biology, 2022-03-02
21.

Shahid Ullah* , Wajeeha Rahman, Farhan Ullah , Gulzar Ahmad , Muhmmad Ijaz & Tianshun Gao
DBHR: a collection of databases relevant to human research 

future science OA, 2022-01-20
2021
22.

Shahid Ullah*, Farhan Ullah, Gulzar Ahmand, Muhammad Ijaz
Significant Contribution to Covid-19 Scientific Community and Nanomaterials Researchers

Journal of Material Sciences & Engineering, 2021-09-29
23.

Shahid Ullah*,Anees Ullah, Wajeeha Rahman, Farhan Ullah, Sher Bahadar Khan, Gulzar Ahmad, Muhammad Ijaz, Tianshun Gaoa
An innovative user - friendly platform for Covid - 19 pandemic databases and resources

Computer Methods and Programs in Biomedicine Update, 2021-09-26
24.

Said Ali Shah, Farhan ullah1, Muhammad Ijaz and Shahid Ullah*
Amplification of ABCG2 Transporter Gene Exon 8 and 14 of Diabetic Patients

Journal of Clinical and Medical Research, 2021-06-19
25.

Azaz Ullah Khan, Gulzar Ahmad1, Muhmmad Ijaz, Khansa Ahsan, Humaira Akhtar, Faheem Ali Khan, Shahid Ullah*
Prevalence and Antibiotic Resistance of Salmonella Species Isolated from Chicken Liver in Peshawar

Journal of Clinical and Medical Research, 2021-06-11
26.

Abdul Haseeb Rahim, Gulzar Ahmad, Muhmmad Ijaz, Humaira Akhtar, KhansaAhsan, Malik Muhammad Rizwan and Shahid Ullah*
Isolation and Identification of Antibiotics susceptible Staph aureus from Unprocessed Milk

Journal of Clinical and Medical Research, 2021-05-15
27.

Shahid Ullah*, Wajeeha Rahman, Farhan Ullah, Gulzar Ahmad, Muhammad Ijaz, Tianshun Gao*
DBPR: DataBase of Plant Research

Research Squair, 2021-01-15
2020
28.

Sher Ali Khan, Muhammad Jawed, Vivake Anand, Kamran Ahmed Soomro, and Muhammad Junaid.
Tremendous Contribution of Dr . Shahid Ullah to Scientific Community during COVID - 19 Pandemic in the Form of Scientific Research

Journal of Clinical and Medical Research, 2020-10-05
29.

Shahid Ullah,*, Farhan Ullah, Wajeeha Rahman, Muhammad Ijaz, Gulzar Ahmad and Waheed Ullah.
EDBCO - 19: Emergency Data Base of COVID - 19

Journal of Clinical and Medical Research, 2020-08-24
30.

Delilah F.G. Hendriks,Sabine U. Vorrink,Tomas Smutny,Sarah C. Sim,Åsa Nordling,Shahid Ullah,Masaki Kumondai,Barry C. Jones,Inger Johansson,Tommy B. Andersson,Volker M. Lauschke,Magnus Ingelman-Sundberg … See fewer authors
Clinically Relevant Cytochrome P450 3A4 Induction Mechanisms and Drug Screening in Three - Dimensional Spheroid Cultures of Primary Human Hepatocytes

clinical pharmacology and therapeutics, 2020-04-22
2019
31.

Shahid Ullah, Jiali Yu, Huichao Liu, Waheed Iqbal, Bo Yang, Cuihua Li,Caizhen Zhu, Jian Xu
Fabrication of MnO2 - carbonized cotton yarn derived hierarchical porous active carbon flexible supercapacitor electrodes for potential applications in cable - type devices

Applied Surface Science, 2019-09-01
32.

Shi-ting Deng, Zi- ting Lin, Hai-Xia Tang, Shahid Ullah, Yang-Guang Bi
Rapid synthesis of hydroxyapatite nanoparticles via a novel approach in the dual - frequency ultrasonic system for specific biomedical application

Journal of Materials Researc, 2019-08-28
33.

Sher Bahadar Khan, Mumtaz Ali Khan, Irshad Ahmad, Tayyab Ur Rehman, Shahid Ullah, Rahim Dad, Asad Sultan, Atta Muhammad Memonh
Phentotypic, gentotypic antimicrobial resistance and pathogenicity of Salmonella enterica serovars Typimurium and Enteriditis in poultry and poultry products

Microbial Pathogenesis, 2019-04-01
2018
35.

Huichao liu, Ludi Shi, Pei Han, Shahid Ullah, Jiali Yua, Bo Yang, Cuihua Li, Caizhen Zhu, Jian Xu
Hierarchically porous carbon derived from waste acrylic fibers for super - high capacity lithium ion battery anodes

Chemical Engineering Journal, 2018-08-15
36.

Huichao liu, Ludi Shi, Dongzhi Li, Jiali Yu, Han-Ming Zhanga, Shahid Ullah, Bo Yang, Cuihua Li, Caizhen Zhu, Jian Xu
Rational design of hierarchical ZnO@Carbon nanoflower for high performance lithium ion battery anodes

Journal of Power Sources, 2018-05-31
37.

Y Lin, Z Qiu, D Li, S Ullah, Y Hai, H Xin, W Liao, B Yang, HFan, JXu, CZhu
nanocrystals encapsulated in N - doped carbon nanocubes for high performance lithium / sodium ion batteries

Energy Storage Materials, 2018-04-13
38.

Jianguo Du,Zhe Wang,Jiali Yu,Shahid Ullah,Bo Yang,Cuihua Li,Ning Zhao,Bin Fei,Caizhen Zhu,Jian Xu
Ultrahigh - strength UHMWPE based fiber electrode for high performance flexible supercapacitors

Advance Functional Material, 2018-03-30
39.

Yemao Lina,Zhaoz heng Qiua, Dongzhi Li, Shahid Ullah, Yang Hai, Hailin Xina, Weidong Li, Bo Yang, Haosen Fanc Jian Xu, Caiz henZhua
NiS2@CoS2 nanocrystals encapsulated in N - doped carbon nanocubes for high performance lithium / sodium ion batteries

Energy Storage Materials, 2018-03-01
40.

Zhao zhengQiua, Yemao Lina, Hailin Xin, PeiHan, Dongzhi, LiaBoYang, Pengchong Lia, Shahid Ullah, Haosen Fana,Caizhen Zhua, JianXub
Ultrahigh level nitrogen / sulfur co - doped carbon as high performance anode materials for lithium - ion batteries

Corbon, 2018-01-01
2017
41.

Wang, Y., Xiao, L.D., Ullah S., He, G.P. and De Bellis, A
Evaluation of a nurse - led dementia education and knowledge translation programme in primary care: a cluster randomized controlled tria

Nurse education today, 2017-12-16
42.

Wankun Deng, Yongbo Wang, Lili Ma, Ying Zhang, Shahid Ullah, Yu Xue
Computational prediction of methylation types of covalently modified lysine and arginine residues in proteins

Brefing in Bioinformatics, 2017-07-01
2016
43.

Deng W, Wang Y, Ma L, Zhang Y, Ullah S, Xue Y
Computational prediction of methylation types of covalently modified lysine and arginine residues in proteins

Brefing in Bioinformatics, 2016-05-28
44.

Shahid Ullah* Shaofeng Lin, Yang Xu, Wankun Deng, Lili Ma, Ying Zhang, Zexian Liu, and Yu Xueb.
dbPAF: an integrative database of protein phosphorylation in animals and fungi

Scientific Report, 2016-03-24
2015
45.

Zhicheng Pan, Bangshan Wang, Ying Zhang, Yongbo Wang, Shahid Ullah, Ren Jian, Zexian Liu, Yu Xue.
dbPSP: a curated database for protein phosphorylation sites in prokaryotes

The Journal of Biological Databases and Curation, 2015-04-03
46.

Li Shujing, Shui Ke, Zhang Ying, Lv Youggiang, Deng Wankun, Shahid Ullah, Zhang Lluoying, Xue Yu.
CGDB: a database of circadian genes in eukaryotes

Journal of Nucleic Acids Research "NAR, 2015-01-01
2014
48.

Zhicheng Pan, Zexian Liu, Han Cheng, Yongbo Wang, Tianshun Gao, Shahid Ullah, Jian Ren, and Yu Xuea.
Systematic analysis of the in situ crosstalk of tyrosine modifications reveals no additional natural selection on multiply modified residues

Scientific Report, 2014-12-05