RiceVarMap v2.0 is a comprehensive database for rice genomic variation and its functional annotation. It provides curated information of 17,397,026 genomic variations (including 14,541,446 SNPs and 2,855,580 small INDELs ) from sequencing data of 4,726 rice accessions. These variations were identified using GATK software based on the assembly Os-Nipponbare-Reference-IRGSP-1.0. (Note: you can still access to RiceVarMap v1.0 for querying variations based on the old assembly Nipponbare MSU v6.1.)