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Database: Het PDB Navi

Het PDB Navi is a database that collects small molecules found in Protein Data Bank (PDB). An atomic reality of protein function is based on interactions between a protein and another molecule. One of the approaches to assume protein functions from the genome sequences is to predict interactions between proteins and the molecules. Toward that goal, we have searched through interactions of proteins and other molecules in PDB to survey molecules of which interaction modes are available. In PDB, the molecules that interact with proteins are mainly small molecules except for DNA and RNA

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